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Pull requests: nf-core/raredisease
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Remove redundant index processes
#884
opened Jun 15, 2026 by
sofiademmou
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12 tasks
Fix swapped run_mt_for_wes / skip_split_multiallelics arguments in CALL_SNV (fixes #854)
#883
opened Jun 14, 2026 by
apolitics
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Add FastDup from nf-core modules to raredisease (subworkflow align_bwa_bwamem2_bwameme)
#876
opened Jun 10, 2026 by
emmadizdarevic
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Draft
3 of 12 tasks
Replace ch_publish with named typed emits for call_snv, call_snv_deepvariant, and postprocess_MT_calls
#863
opened May 29, 2026 by
ramprasadn
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12 tasks
Remove redundant indexing processes by enabling native index creation
#859
opened May 28, 2026 by
ramprasadn
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Draft
12 tasks
fix(postprocess_mt_calls): split multiallelics after bcftools merge
#855
opened May 25, 2026 by
ramprasadn
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12 tasks
[dup] Add support for variant scoring by MIVMIR, GICAM models
#849
opened May 19, 2026 by
torbjorgen
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Add support for variant scoring by MIVMIR, GICAM models
#812
opened Apr 16, 2026 by
torbjorgen
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18 tasks done
Add GATK contamination check to complement VerifyBamID2
#758
opened Dec 15, 2025 by
dorotejavujinovic
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5 of 8 tasks
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